LeafNet
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Input image
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Basic configuration
Image resolution
resolution of input image, pixel per μm
Background type
Bright
Dark
backgroud type of input image, Bright for bright field or Dark for fluorescent image
Advanced configuration
Image denoiser
Method
Peeled Denoiser
Stained Denoiser
None
choose a denoiser to remove noise, or none to use original image
Level
0-100, strength of denoizing
Pavement cell segmentator
Method
LeafSeg
ITK Morphological Watershed
choose a cell divider to segment pavement cells
Threshold
0-100, higher threshold avoids false cell border, but might ignores blur ones
Min size
minimum size of a pavement cell in μm
2
to be identified
Stoma detector
Method
StomaNet
StomaNet Confocal
StomaNet Universal
None
choose a stoma detection model to localize stomata
Threshold
0-100, higher threshold decreases false positive rate, but increases false negative rate.
Min size
minimum size of a stoma in μm
2
to be retained
Max size
maximum size of a stoma in μm
2
to be retained
Max length/width ratio
maximum length/width ratio of a stoma to be retained